No he won't, a few reasons:
1) The TKs hate Nagash, he cursed them. They were expecting to wake up in paradise but instead they are awoke by Nagash's great spell.
2) Nagash has time and time again attempted to rule Khemri and the other great cities via war, and they TKs have forced him back time and time again. They will never bow down to him (especially Settra).
3) He will reappear in the 2005 or 2006 campaign that will be based around Khemri, and Nagash's bid to rule it again.